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Once the Genomics production has been picked, users Similar to Cell Ranger - Gene Expression task, first time user will be asked to create a Reference assembly if it is the first time to run the Cell Ranger - Gene Expression task (Figure 2). In Partek Flow, we will use Cell Ranger ARC 2.0.0 to create reference assembly for all 10x Genomics analysis pipelines.  To create and use a reference assembly, Cell Ranger ARC requires a reference genome sequence (FASTA file) and gene annotations (GTF file), here is the detailsPlease refer to our Cell Ranger - Gene Expression task manual on how to build or use Reference assembly.

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