Partek Flow Documentation

Page tree

Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

To run the Cell Ranger - Gene Expression task for scRNA-seq data in Flow, select Unaligned reads datanode, then select Cell Ranger - Gene Expression in the 10x Genomics section (left panel, Figure 1). For Feature Barcode data, there will be two data nodes once the fastq FASTQ files have been imported into Flow properly - mRNA and protein (right panel, Figure 1). Users should select mRNA datanode to trigger the Cell ranger - Gene Expression task. 

...