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To create a new reference, push the Create Cell Ranger 6.0.0 reference button and pick the appropriate Cell Ranger reference name from the drop down (Figure 3) and then push Create.

Downloading a reference is a separate task and may take some time. However, it will become immediately available in the Cell Ranger 6.0.0. reference drop down (Figure 4).

Alternatively, Cell Ranger reference can be added beforehand, to the Library file management page (on the Other library files tab).  At the moment, the following references are available for download from Partek: hg38, mm10, and hg38-mm10 (chimaeric genome).