Table of Contents
maxLevel 2 minLevel 2 exclude Additional Assistance

Classification in Partek Flow

Garnett[1] automated cell type classification has been wrapped as the Classification task in Partek Flow. Just like the original Garnett tool, Classification in Flow works on single-cell data, along with a cell type definition (marker) file, and trains a regression-based classifier. Once a classifier is obtained and published, it can be applied to classify future datasets from similar tissues. To improve the user experience, both maker file(.txt) and classifier file(.rds) have been implemented as library files in Flow. 

...