Partek Flow Documentation

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Numbered figure captions
SubtitleTextSpecifying Monocle 3 default options
AnchorNamemonocle3 setup

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Under the hood, Monocle 3 will perform log2 transformation of the gene count matrix (if Data is logged was unselected), scale the matrix (if Scaling was selected), and project the gene count matrix into the top 50 principal components. Next, the dimensionality reduction will be implemented by UMAP (using default settings of the reduce_dimension command).

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