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To download a text file containing the number of classified reads for each taxon at a given taxonomic level, for each sample:
- Under the Analyses tab, click the Classified sequence data node
- Click Download data from the menu on the right
- Click the Count matrix radio button
- Select a taxonomic level
- Click Download (Figure 6)
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A tab-delimited text file will be downloaded to your local machine through the web browser. Taxa are on rows and samples are on columns. The values are the raw number of classified reads for each taxon, for each sample.
References
[1] Wood DE, Salzberg SL: Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biology 2014, 15:R46.
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