Flow Documentation

Partek Flow Documentation

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Numbered figure captions
SubtitleTextConfiguring Kraken
AnchorNameKraken task configuration

Image Modified

Kraken generates a Classified sequence data node. This data type is the input for the Alpha & beta diversity task. 

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  • Under the Analyses tab, click the Classified sequence data node
  • Click Download data from the menu on the right
  • Click the Count matrix radio button
  • Select a taxonomic level
  • Click Download (Figure 6)


Numbered figure captions
SubtitleTextDownload data dialog on Classified sequences data node
AnchorNameDownloading the count matrix




References

[1] Wood DE, Salzberg SL: Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biology 2014, 15:R46.

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