Partek Flow Documentation

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To calculate pseudotime, you must choose a root state. The tip of the root state branch will 0 in pseudotime. Click any cell belonging to that state to select the state. The selected state will be bold while unselected cells are dimmed (Figure 4). 

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To use the selected state as the Root root state for pseudotime calculation, select the state and then click the Calculate pseudotime button (Figure 5). 

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Numbered figure captions
SubtitleTextCalculate pseduotime output
AnchorNameCalculate pseudotime output

The Calcuate pseudotime task report is the same as the Trajectory analysis task report, but is colored by the newly calculated cell-level attribute, Pseudotime, by default (Figure 7). 

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