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Smith T, Hegar A, Sudbery I. UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy. Genome Research 2017; 27(3): 491-499. https://doi.org/10.1101/gr.209601.116
Cell Ranger Algorithms Overview, 10x Genomics https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/algorithms/overview
Drop-seq Alignment Cookbook v1.2 Jan 2016, James Nemesh, Steve McCarroll’s lab, Harvard Medical School http://mccarrolllab.com/wp-content/uploads/2016/03/Drop-seqAlignmentCookbookv1.2Jan2016.pdf
Cell Ranger Algorithms Overview, 10x Genomics https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/algorithms/overview
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