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- This license feature allows users to run the RNA-seq workflow (includes Quantification, Normalization, Differential Gene Expression)
Single Cell Toolkit
- This license feature allows users to perform analysis of Single Cell RNA-seq data
DNA-seq Toolkit
- This license feature allows users to run the Variant Calling (SNVs, indels, CNV) and Variant Annotation tools
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- Users can convert microarray data to unaligned reads. The conversion tasks for the aligners appear in the context-sensitive menu, under the section “Convert to Aligned Reads”. Refer to Microarray Toolkit for additional details.
ChIP-Seq Toolkit
- Implementation of the MACS2 peak caller as a task (Zhang et al. Model-based Analysis of ChIP-Seq (MACS). Genome Biol (2008) vol. 9 (9) pp. R137)This license feature allows users to analyze data from ChIP-Seq experiments including peak detection, enrichment and annotation. Also compatible with other region enrichment experiments such as ATAC-Seq.
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