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Partek Genomics Suite detects de novo motifs using the Gibbs motif sampler (Neuwald et al., Protein Science, 1995) and can search for known transcription factor binding sites using a database such as JASPAR.
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- Select motif_instances from the spreadsheet tree
- Right-click the filter bar
- Select Clear Filter
References
Neuwald, A. F., Liu, J.S., & Lawrence, C.E. (1995). Gibbs motif sampling: detection of outer membrane repeats (Vol. 4). Protein Science.
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