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- Right click column 6. Average Coverage and select Sort Descending from the menu
- Select Find Overlapping Genes from the Tools option in the command toolbar (Figure 1)
Numbered figure captions |
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SubtitleText | Selecting Find Overlapping Genes from Tools in the command toolbar |
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AnchorName | Find Overlapping Genes |
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![](/download/attachments/11108926/fig45.png?version=1&modificationDate=1498514820281&api=v2)
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- Select Add a new column with the gene nearest to the region in the Find Overlapping Genes dialog (Figure 2)
- Select OKOK
Numbered figure captions |
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SubtitleText | Find Overlapping Genes |
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AnchorName | Add a new column with nearest gene |
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![](/download/attachments/11108926/fig46.png?version=1&modificationDate=1498514820272&api=v2)
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Please note that it is recommended that you annotate with the same database as when you performed mRNA quantification.
Numbered figure captions |
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SubtitleText | Select the database to search for overlapping features |
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AnchorName | Select Database with Overlapping Features |
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![](/download/attachments/11108926/fig47.png?version=1&modificationDate=1498514820241&api=v2)
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- Select row 45 and Browse to location to show a region within an intron of UNC45B. This may be a novel exon (Figure 6)
Numbered figure captions |
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SubtitleText | A region within an intron of UNC45B that might be an novel exon |
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AnchorName | Novel Exon example |
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![](/download/attachments/11108926/fig51.png?version=2&modificationDate=1498515277465&api=v2)
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- Select row 10482 and Browse to location to show a region that starts 1 bp after CD82. This peak may represent an extended exon (Figure 7)
Numbered figure captions |
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SubtitleText | A region that starts 1 bp after CD82 that might represent an extended exon |
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AnchorName | Extended Exon example |
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![](/download/attachments/11108926/fig52.png?version=1&modificationDate=1498515345100&api=v2)
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