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- Select Customize... to open the Advanced Import Options dialog
- Choose No normalization in the Normalization section of the Algorithm tab
- Select the Outputs tab (Figure 2)
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This spreadsheet contains copy number values per probe in log2 space (i.e. diploid = 0). This Prior to performing copy number analysis, you can normalize for local GC abundance.
- Select Transform
- Select Adjust Based on Local GC Content...
- Click OK to run Local GC Adjustment (Figure 4)
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